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Intron Name: Anas_platyrhynchos_platyrhynchos_11_890217_890797_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

890217 - 890797

Intron Length:

581

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTTTC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGGCAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATCTTTTTATT

Flanking Amino Acid:

KIRDTLYIAGRDQVYTVNLN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

84.2

27.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

64.3

0.32

1.1

58.7

41.1

Minor 5ss

44.8

-0.6

2.8

61.7

43.1

Minor BPS

56.2

0.28

1.6

73.66

37.7

Associated Gene:

Gene:

SEMA6D

Ensembl Gene ID:

ENSAPLG00000009360

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038721

873217 - 902149

28933

ENSAPLT00000027125

873217 - 902149

28933

ENSAPLT00000009805

827474 - 902149

74676

ENSAPLT00000043123

873089 - 902149

29061

ENSAPLT00000042811

873089 - 902149

29061