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Intron Name: Anas_platyrhynchos_platyrhynchos_11_890859_890984_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

890859 - 890984

Intron Length:

126

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTGATTTGAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

TTGATTTGAATA

Flanking Amino Acid:

VPKSEVTPSRKLTWRSRQQD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.1

38.4

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

0.34

1.1

62.3

43.2

Minor 5ss

29.2

-2.4

2.5

36.7

Minor BPS

0.15

1.4

64.09

36.7

Associated Gene:

Gene:

SEMA6D

Ensembl Gene ID:

ENSAPLG00000009360

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027125

873217 - 902149

28933

ENSAPLT00000009805

827474 - 902149

74676

ENSAPLT00000043123

873089 - 902149

29061

ENSAPLT00000042811

873089 - 902149

29061

ENSAPLT00000038721

873217 - 902149

28933