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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_891235_891454_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
891235 - 891454
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ACCCATTTATTT
Flanking Amino Acid:
AFNPMCRYYRLNTLEYDGEE
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
78.7
37.2
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
87.8
0.85
0.6
81.8
30.3
Minor 5ss
35.4
-1.7
3.2
40.3
45.6
Minor BPS
45.5
-0.2
1.7
56.07
40.9

Associated Gene:

Gene:
SEMA6D
Ensembl Gene ID:
ENSAPLG00000009360
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027125
873217 - 902149
28933
ENSAPLT00000009805
827474 - 902149
74676
ENSAPLT00000043123
873089 - 902149
29061
ENSAPLT00000042811
873089 - 902149
29061
ENSAPLT00000038721
873217 - 902149
28933