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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_891546_891822_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
891546 - 891822
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACATTTTCAACT
Flanking Amino Acid:
ARQTNVALFADGKLYSATVA
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.1
0.52
0.9
70
35.8
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
58.9
0.36
1.5
70.82
40.4

Associated Gene:

Gene:
SEMA6D
Ensembl Gene ID:
ENSAPLG00000009360
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042811
873089 - 902149
29061
ENSAPLT00000038721
873217 - 902149
28933
ENSAPLT00000027125
873217 - 902149
28933
ENSAPLT00000009805
827474 - 902149
74676
ENSAPLT00000043123
873089 - 902149
29061