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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_891943_892395_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
891943 - 892395
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTTTTGAAGT
Flanking Amino Acid:
TIKYDSKWIKEPHFLHAIEY
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.4
0.8
0.8
80
30.5
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
59.3
0.37
1.7
78.48
38

Associated Gene:

Gene:
SEMA6D
Ensembl Gene ID:
ENSAPLG00000009360
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038721
873217 - 902149
28933
ENSAPLT00000027125
873217 - 902149
28933
ENSAPLT00000009805
827474 - 902149
74676
ENSAPLT00000043123
873089 - 902149
29061
ENSAPLT00000042811
873089 - 902149
29061