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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_893457_893564_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
893457 - 893564
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAA
U12 Branch Point Sequence:
TCTTGTTTTACA
Flanking Amino Acid:
VVGVFTTQLNSIPGSAVCAF
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
53.5
0.09
1.4
67
39.8
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
55
0.15
2.1
70.62
41.9

Associated Gene:

Gene:
SEMA6D
Ensembl Gene ID:
ENSAPLG00000009360
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009805
827474 - 902149
74676
ENSAPLT00000043123
873089 - 902149
29061
ENSAPLT00000042811
873089 - 902149
29061
ENSAPLT00000038721
873217 - 902149
28933
ENSAPLT00000027125
873217 - 902149
28933