About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_893697_893895_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
893697 - 893895
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
AGGGAAAAAACA
Flanking Amino Acid:
AVPEDKVPKPRPGCCAKHGL
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
70.2
0.5
1
72.1
33
Major PPT
84
0.76
0.8
81
31
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
35.3
-1.1
2
41.74
38.5

Associated Gene:

Gene:
SEMA6D
Ensembl Gene ID:
ENSAPLG00000009360
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038721
873217 - 902149
28933
ENSAPLT00000027125
873217 - 902149
28933
ENSAPLT00000009805
827474 - 902149
74676
ENSAPLT00000043123
873089 - 902149
29061
ENSAPLT00000042811
873089 - 902149
29061