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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_894313_895044_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
894313 - 895044
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
LEEIEAYNHAKCNAESEEDR
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
87.9
0.85
0.8
85.2
28
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
SEMA6D
Ensembl Gene ID:
ENSAPLG00000009360
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027125
873217 - 902149
28933
ENSAPLT00000009805
827474 - 902149
74676
ENSAPLT00000043123
873089 - 902149
29061
ENSAPLT00000042811
873089 - 902149
29061
ENSAPLT00000038721
873217 - 902149
28933