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Intron Name: Anas_platyrhynchos_platyrhynchos_11_896286_896634_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

896286 - 896634

Intron Length:

349

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

TTAATTCTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

GTTCCTTTAATT

Flanking Amino Acid:

GNTAQLGDCHEILPTTATPD

Intron Amino Acid Position:

580

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

71.3

40.1

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

79.8

0.67

0.8

78.1

Minor 5ss

32.6

-2

3.4

44.3

44.6

Minor BPS

77.2

0.93

1.1

86.21

33.4

Associated Gene:

Gene:

SEMA6D

Ensembl Gene ID:

ENSAPLG00000009360

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042811

873089 - 902149

29061

ENSAPLT00000027125

873217 - 902149

28933

ENSAPLT00000009805

827474 - 902149

74676