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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_896286_900845_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
896286 - 900845
Intron Length:
4560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TACATGTAAATT
Flanking Amino Acid:
GNTAQLGDCHGVRWEVQSGE
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.3
40.1
Major BPS
84.6
0.86
1
74
41.2
Major PPT
82.8
0.74
0.9
77.3
36.3
Minor 5ss
32.6
-2
3.4
44.3
44.6
Minor BPS
43.8
-0.3
2.2
60.66
43.7

Associated Gene:

Gene:
SEMA6D
Ensembl Gene ID:
ENSAPLG00000009360
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038721
873217 - 902149
28933