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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8963885_8964443_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8963885 - 8964443
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGGGGGGC
5'SS Class:
weak_major
3'SS Sequence:
CCTGAACACCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CCCTCCTGAACA
Flanking Amino Acid:
KPTSPPWPPVSARGGGAAEL
Intron Amino Acid Position:
1313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.2
0.05
1.2
46.2
35.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
48.6
-0
1.1
42
36.6
Minor 5ss
24.7
-2.9
3.6
31.4
43.2
Minor BPS
65.5
0.48
1.5
67.78
44.7

Associated Gene:

Gene:
CSPG4
Ensembl Gene ID:
ENSAPLG00000020991
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026379
8959163 - 8969983
10821