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Intron Name: Anas_platyrhynchos_platyrhynchos_11_896692_898549_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

896692 - 898549

Intron Length:

1858

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTTAGTTTT

5'SS Class:

major

3'SS Sequence:

TTTGCCACCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TACACATTAATA

Flanking Amino Acid:

DYKIFGDPTSDMEFSSASIT

Intron Amino Acid Position:

599

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

1.1

81.7

32.3

Major BPS

70.8

0.52

70.6

31.6

Major PPT

73.2

0.52

0.9

66.3

34.4

Minor 5ss

42.6

-0.8

2.8

57.1

41.4

Minor BPS

59.4

0.29

1.6

66.69

39.5

Associated Gene:

Gene:

SEMA6D

Ensembl Gene ID:

ENSAPLG00000009360

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027125

873217 - 902149

28933

ENSAPLT00000009805

827474 - 902149

74676