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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8967707_8968091_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8967707 - 8968091
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CGTTTCTGATGC
Flanking Amino Acid:
QRSTQLWRNAGLQLARGERA
Intron Amino Acid Position:
1694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.1
0.79
0.7
77.5
31.2
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
45.3
-0.3
2
55.16
43.1

Associated Gene:

Gene:
CSPG4
Ensembl Gene ID:
ENSAPLG00000020991
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026379
8959163 - 8969983
10821