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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9009747_9010231_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9009747 - 9010231
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
GCTCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
GGATTGTGACAT
Flanking Amino Acid:
LDIMKEFKSQSIDTPGVISR
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
82
0.72
0.8
76
32.4
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
38.2
-0.8
2.2
52.28
41.8

Associated Gene:

Gene:
SIN3A
Ensembl Gene ID:
ENSAPLG00000012706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013265
9006763 - 9030340
23578