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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9010515_9012426_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9010515 - 9012426
Intron Length:
1912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCTTACTGATTC
Flanking Amino Acid:
PQPPPAKISKPSQLQAHTPA
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
78.6
0.64
0.7
77.3
24.7
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
49.3
-0
1.9
64.11
41.6

Associated Gene:

Gene:
SIN3A
Ensembl Gene ID:
ENSAPLG00000012706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013265
9006763 - 9030340
23578