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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9012679_9013019_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9012679 - 9013019
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTCCCTCTGACA
Flanking Amino Acid:
AFLEILHTYQKEQRNAKEAG
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
76.6
0.6
0.9
73
32
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
55.3
0.16
1.7
68.61
37.6

Associated Gene:

Gene:
SIN3A
Ensembl Gene ID:
ENSAPLG00000012706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013265
9006763 - 9030340
23578