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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9013654_9014583_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9013654 - 9014583
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
SGTGTTPPVKKKPKLLGLKD
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
72.5
37.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
30.7
-2.2
3.3
39.2
46.2
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
SIN3A
Ensembl Gene ID:
ENSAPLG00000012706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013265
9006763 - 9030340
23578