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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9023064_9023473_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9023064 - 9023473
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TCTCTTGGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ACGTGTTCATCC
Flanking Amino Acid:
PAIQLRLKEPMDIDVEDYYP
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.8
34.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.6
0.6
1
72.2
37.8
Minor 5ss
34
-1.8
3.4
49.1
41.3
Minor BPS
41.9
-0.6
2
48.12
42.3

Associated Gene:

Gene:
SIN3A
Ensembl Gene ID:
ENSAPLG00000012706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013265
9006763 - 9030340
23578