About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9026203_9026527_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9026203 - 9026527
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCGCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CGTGGCTGACCT
Flanking Amino Acid:
ENSDDPVEAERWSDYVERYV
Intron Amino Acid Position:
1098

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
75.3
0.57
0.9
65.3
41.1
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
43.4
-0.4
2.2
60.99
48.3

Associated Gene:

Gene:
SIN3A
Ensembl Gene ID:
ENSAPLG00000012706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013265
9006763 - 9030340
23578