About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9026623_9027115_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9026623 - 9027115
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TGAGCACTAATC
Flanking Amino Acid:
HLAQKPVFLPRNLRRIRKCQ
Intron Amino Acid Position:
1129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
78.5
0.64
0.9
71.9
38
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
46.5
-0.2
2
58.2
40.3

Associated Gene:

Gene:
SIN3A
Ensembl Gene ID:
ENSAPLG00000012706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013265
9006763 - 9030340
23578