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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9027324_9029352_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9027324 - 9029352
Intron Length:
2029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
TCTGTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGTAAC
U12 Branch Point Sequence:
CTCCTCGTAACA
Flanking Amino Acid:
RRTALLRAQQSHERVSKRLH
Intron Amino Acid Position:
1199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
61.9
0.3
1.2
63.6
40.3
Major PPT
85.6
0.8
0.8
80.7
31.4
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
50.4
0.01
2.1
63.68
43.1

Associated Gene:

Gene:
SIN3A
Ensembl Gene ID:
ENSAPLG00000012706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013265
9006763 - 9030340
23578