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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9032379_9032582_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9032379 - 9032582
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
GCTCTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAG
U12 Branch Point Sequence:
CCCGCAGCGAGG
Flanking Amino Acid:
PAALGDSFGPPWETCWFKVE
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
71.8
39.7
Major BPS
43.4
-0.4
1.6
34.6
43.7
Major PPT
78
0.63
0.9
68.5
42.1
Minor 5ss
34.8
-1.7
2.8
48.5
40.3
Minor BPS
27.6
-1.9
2.1
22.66
36.7

Associated Gene:

Gene:
MAN2C1
Ensembl Gene ID:
ENSAPLG00000012217
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012768
9032066 - 9042690
10625