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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9036705_9037008_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9036705 - 9037008
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
AAATTCCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAAAA
U12 Branch Point Sequence:
CTGTGCAAAATT
Flanking Amino Acid:
SYGMLGRVEEMLKTVKNNKD
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
52.9
0.07
1.1
59.3
35.9
Major PPT
69.3
0.44
0.9
59.9
41.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
44.3
-0.3
2.3
63.96
46.9

Associated Gene:

Gene:
MAN2C1
Ensembl Gene ID:
ENSAPLG00000012217
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012768
9032066 - 9042690
10625