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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9037155_9037598_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9037155 - 9037598
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCCTCCTGACCT
Flanking Amino Acid:
KRMRDTDGLPRVQMSTPDRL
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
73.5
0.53
0.7
65
30.7
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
53.3
0.18
1.9
68.08
48.5

Associated Gene:

Gene:
MAN2C1
Ensembl Gene ID:
ENSAPLG00000012217
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012768
9032066 - 9042690
10625