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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9039606_9039698_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9039606 - 9039698
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTCTA
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
GGATGTTGAAGC
Flanking Amino Acid:
RTGPTGADVLALVTAPSMGY
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
71.8
39.4
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
88.5
0.87
0.7
80.6
31.4
Minor 5ss
40.2
-1.1
2.7
50.6
45.7
Minor BPS
43
-0.5
2
49.49
40.5

Associated Gene:

Gene:
MAN2C1
Ensembl Gene ID:
ENSAPLG00000012217
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012768
9032066 - 9042690
10625