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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9039782_9039925_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9039782 - 9039925
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTCAT
U12 Branch Point Sequence:
GCCCCATGGAGT
Flanking Amino Acid:
PLQPVTVTEQEDGSVTMENG
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
59.3
0.23
1.4
63.4
44.3
Major PPT
80.5
0.69
0.7
72.9
32
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
40.7
-0.6
1.9
51.3
42.8

Associated Gene:

Gene:
MAN2C1
Ensembl Gene ID:
ENSAPLG00000012217
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012768
9032066 - 9042690
10625