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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9040240_9040432_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9040240 - 9040432
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGAG
5'SS Class:
major
3'SS Sequence:
CCCCTTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
TCTGCCTTTACC
Flanking Amino Acid:
WDVMDYHLETRKPVTTVLKP
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
57.3
42
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
75.9
0.58
0.7
68.5
31.9
Minor 5ss
26.5
-2.7
3.7
36.3
48.1
Minor BPS
66.1
0.49
1.8
74.54
42.5

Associated Gene:

Gene:
MAN2C1
Ensembl Gene ID:
ENSAPLG00000012217
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012768
9032066 - 9042690
10625