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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9044630_9044823_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9044630 - 9044823
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTGG
5'SS Class:
major
3'SS Sequence:
CCCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTCAC
U12 Branch Point Sequence:
AGCCCGGTCACT
Flanking Amino Acid:
DHNGRTIWFQGEPGPMVPGG
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
56.7
45
Major BPS
49
-0
1.3
52.4
43.3
Major PPT
82
0.72
0.7
76.1
26
Minor 5ss
36.4
-1.5
3.2
46.4
49
Minor BPS
37.7
-0.8
2.7
56.07
46

Associated Gene:

Gene:
NEIL1
Ensembl Gene ID:
ENSAPLG00000021670
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036838
9043629 - 9048613
4985