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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9044949_9045072_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9044949 - 9045072
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
TCTCCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTCTCTC
Flanking Amino Acid:
HTVPMEVVAAEKNLLDPDHA
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.4
45.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
80.4
0.68
0.7
72.4
32.2
Minor 5ss
28.5
-2.5
3.3
30.2
42.9
Minor BPS
41.6
-0.6
3.7
70.76
41

Associated Gene:

Gene:
NEIL1
Ensembl Gene ID:
ENSAPLG00000021670
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036838
9043629 - 9048613
4985