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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9045173_9046238_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9045173 - 9046238
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
TCTGCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
TGCCAGGTGACT
Flanking Amino Acid:
KQQEQERRKKNSSLPPSKKL
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
37
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
77
0.61
0.8
70
30.9
Minor 5ss
27.1
-2.6
3.3
38.2
47
Minor BPS
38.4
-0.8
2.6
58.26
44.6

Associated Gene:

Gene:
NEIL1
Ensembl Gene ID:
ENSAPLG00000021670
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036838
9043629 - 9048613
4985