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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9048166_9048254_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9048166 - 9048254
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCCCG
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TTCTCCCCACAG
Flanking Amino Acid:
SADKFRVLLAELKQAQALMQ
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
57.2
47.5
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
78.7
0.65
0.7
72.6
25.7
Minor 5ss
36.8
-1.5
3.3
47.9
47.8
Minor BPS
42.9
-0.6
2.2
53.67
46.6

Associated Gene:

Gene:
COMMD4
Ensembl Gene ID:
ENSAPLG00000012146
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012664
9048125 - 9050687
2563
Gene:
NEIL1
Ensembl Gene ID:
ENSAPLG00000021670
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036838
9043629 - 9048613
4985