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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9048426_9048585_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9048426 - 9048585
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
CCTCCCGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GAGGCTGTGACC
Flanking Amino Acid:
QESLRACSLRLSQLDSVSWR
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
71.1
34.7
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
75.1
0.57
0.9
68.2
31.9
Minor 5ss
28.9
-2.4
3
31.7
35.3
Minor BPS
44.4
-0.4
2.1
50.43
40.9

Associated Gene:

Gene:
COMMD4
Ensembl Gene ID:
ENSAPLG00000012146
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012664
9048125 - 9050687
2563
Gene:
NEIL1
Ensembl Gene ID:
ENSAPLG00000021670
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036838
9043629 - 9048613
4985