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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9049039_9049142_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9049039 - 9049142
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGAAT
U12 Branch Point Sequence:
TCGGGCTGAATC
Flanking Amino Acid:
ILKLTSDAKLESGDVKATIA
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
47.7
-0.1
1.6
57.6
45.8
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
46.5
-0.2
2
54.31
44.4

Associated Gene:

Gene:
COMMD4
Ensembl Gene ID:
ENSAPLG00000012146
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012664
9048125 - 9050687
2563