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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9049421_9054681_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9049421 - 9054681
Intron Length:
5261

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCA|GCCAGGGCC
5'SS Class:
weak_major
3'SS Sequence:
TGTCCCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GGGCGCTGACCC
Flanking Amino Acid:
REGGDGKCQPSSVKLKLICA
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.4
64.8
34.8
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
71.9
0.49
0.8
62.4
34.6
Minor 5ss
17.8
-3.7
3.9
30.7
36.2
Minor BPS
41
-0.7
2
46.36
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012142
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012632
9049271 - 9056905
7635