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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9054992_9055255_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9054992 - 9055255
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TGCCCTGCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
CTGCCAGTGACG
Flanking Amino Acid:
KACSFNKARNTWVPVEGTRD
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
70.9
0.47
0.9
61.3
40.1
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
42.5
-0.7
2.3
48.97
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012142
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012632
9049271 - 9056905
7635