About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9056309_9056554_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9056309 - 9056554
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTTTCCCCACCC
Flanking Amino Acid:
GLHECGSVVQVTPDALIYRT
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
74.3
0.55
0.8
66.5
34.6
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
48.3
-0.1
2.2
67.47
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012142
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012632
9049271 - 9056905
7635