Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9073808_9073984_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9073808 - 9073984

Intron Length:

177

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TCG|GCACCACCC

5'SS Class:

weak_major

3'SS Sequence:

GGGGAGCCTGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGGGAT

U12 Branch Point Sequence:

TCTGCGGGAGCT

Flanking Amino Acid:

TAQQLAAHLLGNRSVPSCAP

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.5

0.13

1.4

51.7

43.3

Major BPS

47.6

-0.1

1.5

46.5

Major PPT

-0.4

1.7

35.8

41.2

Minor 5ss

27.9

-2.5

4.1

43.7

43.6

Minor BPS

36.9

-0.9

2.7

60.09

49.1

Associated Gene:

Gene:

STOML1

Ensembl Gene ID:

ENSAPLG00000011367

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011848

9072401 - 9075372

2972