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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9074848_9075243_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9074848 - 9075243
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
AGATCCTGAGTC
Flanking Amino Acid:
TRAFNVPPCKLTSRDGAVIS
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
79.6
0.67
0.7
72.1
32.5
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
50.8
0.01
1.7
59.94
38.7

Associated Gene:

Gene:
STOML1
Ensembl Gene ID:
ENSAPLG00000011367
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011848
9072401 - 9075372
2972