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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9097059_9097134_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9097059 - 9097134
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TGTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CCCTCCCCAACC
Flanking Amino Acid:
PQPQAGDVEEGIQLMQSTKA
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
82.6
0.73
0.8
73.6
36.9
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
49
-0
2
59.17
45.8

Associated Gene:

Gene:
STRA6
Ensembl Gene ID:
ENSAPLG00000010924
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011393
9096880 - 9108211
11332