Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9100583_9100811_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9100583 - 9100811

Intron Length:

229

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACCGGG

5'SS Class:

major

3'SS Sequence:

CGCTGCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTAAC

U12 Branch Point Sequence:

GGTGGCTCACGT

Flanking Amino Acid:

LTTSVVAVYQVALLLLVAFV

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.6

0.44

1.2

45.2

Major BPS

51.7

0.04

1.3

55.3

40.3

Major PPT

65.4

0.35

0.9

57.7

33.3

Minor 5ss

35.8

-1.6

3.3

46.8

48.5

Minor BPS

37.7

-0.8

2.3

53.22

47.5

Associated Gene:

Gene:

STRA6

Ensembl Gene ID:

ENSAPLG00000010924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038179

9096923 - 9108211

11289

ENSAPLT00000011393

9096880 - 9108211

11332