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Intron Name: Anas_platyrhynchos_platyrhynchos_11_9104451_9107758_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

9104451 - 9107758

Intron Length:

3308

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTTT

5'SS Class:

strong_major

3'SS Sequence:

CTTCCCCGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAAAAC

U12 Branch Point Sequence:

TCCCCCTTCCCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

1.1

87.9

29.3

Major BPS

47.7

-0.1

51.4

28.5

Major PPT

0.56

0.9

69.2

31.3

Minor 5ss

55.9

0.2

2.5

39.7

Minor BPS

40.2

-0.7

3.6

59.26

Associated Gene:

Gene:

STRA6

Ensembl Gene ID:

ENSAPLG00000010924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038179

9096923 - 9108211

11289

ENSAPLT00000011393

9096880 - 9108211

11332