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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9111422_9111642_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9111422 - 9111642
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
AAG|GTGGGCGAA
5'SS Class:
major
3'SS Sequence:
TGTCACCCCACGG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
AGGTCCCCACCG
Flanking Amino Acid:
TRPGAQQGRGSQERGQQEGD
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
64.6
37.4
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
40
-0.5
3.1
54.1
36.3
Minor 5ss
28.8
-2.4
3.5
36.6
47.9
Minor BPS
42.6
-0.7
2.1
47.79
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043856
9111212 - 9133731
22520