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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9111761_9112418_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9111761 - 9112418
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGAG
5'SS Class:
major
3'SS Sequence:
TCCTCATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CACTCCTCATCC
Flanking Amino Acid:
ESAYHSLPTEMPQADPALSS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
63.9
42.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74.7
0.56
0.8
68.5
30.7
Minor 5ss
27.2
-2.6
3.7
36.3
48.1
Minor BPS
50.1
-0
1.9
59.63
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017858
9110935 - 9134142
23208
ENSAPLT00000043856
9111212 - 9133731
22520
ENSAPLT00000032268
9110935 - 9133943
23009