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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9132626_9132741_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9132626 - 9132741
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACCAGCA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTGGAG
U12 Branch Point Sequence:
TTTTTCCCCACA
Flanking Amino Acid:
VQQLQNELIRKNDQEKELVL
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.3
50.8
40.7
Major BPS
38.2
-0.7
1.6
32.2
43.7
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
34.7
-1.7
3.5
39.6
45.9
Minor BPS
48.2
-0.1
2.2
71.95
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043856
9111212 - 9133731
22520
ENSAPLT00000032268
9110935 - 9133943
23009
ENSAPLT00000017858
9110935 - 9134142
23208