About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9132874_9133055_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9132874 - 9133055
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGACAT
U12 Branch Point Sequence:
GCCTTGGGGACA
Flanking Amino Acid:
LEETVRQQEKVIKVMERVLQ
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
43.9
-0.3
1.4
46.4
47
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
35.3
-1.1
2.4
42.38
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043856
9111212 - 9133731
22520
ENSAPLT00000032268
9110935 - 9133943
23009
ENSAPLT00000017858
9110935 - 9134142
23208