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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9133120_9133264_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9133120 - 9133264
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTGTCCCCACGC
Flanking Amino Acid:
RLSMSSEKPAGDLHALLLAE
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
68.6
0.42
0.9
62.5
33.5
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
40
-0.7
2.2
50.74
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043856
9111212 - 9133731
22520
ENSAPLT00000032268
9110935 - 9133943
23009
ENSAPLT00000017858
9110935 - 9134142
23208