About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9133651_9133880_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9133651 - 9133880
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CTTCTCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAAGAT
U12 Branch Point Sequence:
CTTCTCCCACCA
Flanking Amino Acid:
ATCSPHIPTSKHPPGSTFPP
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.2
39.6
Major BPS
47
-0.1
1.1
40.7
38.3
Major PPT
74.4
0.55
0.9
67.2
34
Minor 5ss
35.7
-1.6
2.9
45.4
42.5
Minor BPS
43
-0.5
2
57.29
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032268
9110935 - 9133943
23009