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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9134286_9134731_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9134286 - 9134731
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGAACT
5'SS Class:
major
3'SS Sequence:
CCTCCCACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TTCCTCCCACCC
Flanking Amino Acid:
ELEMQLFLMHILENFKIETK
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
74.2
36.1
Major BPS
50
0
1.2
61.8
35.9
Major PPT
68
0.4
0.8
58.3
31.5
Minor 5ss
32
-2
3
41.3
37.9
Minor BPS
42.9
-0.5
2
56.28
42.1

Associated Gene:

Gene:
CYP11A1
Ensembl Gene ID:
ENSAPLG00000031075
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026744
9133163 - 9137305
4143