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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9134783_9134911_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9134783 - 9134911
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTCTC
5'SS Class:
major
3'SS Sequence:
CGGGCCACGGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
AGGGGCTGAGCT
Flanking Amino Acid:
YRIPPKTLVQCLGRRIAELE
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
67.6
40.1
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
50.7
0.02
1.1
43.7
37.5
Minor 5ss
32.8
-2
3.2
44.2
43.6
Minor BPS
42
-0.5
2.1
55.94
45.9

Associated Gene:

Gene:
CYP11A1
Ensembl Gene ID:
ENSAPLG00000031075
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026744
9133163 - 9137305
4143