About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9134924_9135098_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9134924 - 9135098
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TGGGGCTGATCC
Flanking Amino Acid:
ILQDYRIPPKTLVQCLGRRI
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
82.8
0.74
0.7
76.2
32.4
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
42.4
-0.6
2.1
51.62
45.3

Associated Gene:

Gene:
CYP11A1
Ensembl Gene ID:
ENSAPLG00000031075
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026744
9133163 - 9137305
4143